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Software
SatTCR
docker
snakemake
T-cells
Immunology
QC
Jan 11, 2025
Rene Welch
microbiome-pipeline
R
microbiome
QC
snakemake
Screenshot of microbiome-pipeline github repo
Jul 12, 2023
Rene Welch
ChIPUtils
R
genomics
QC
ChIP-seq
It includes some commonly used quality control measures:
Oct 3, 2017
Rene Welch
ChIPexoQual
R
genomics
QC
ChIP-exo
ChIP-nexus
ChIP-exo/nexus experiments rely on innovative modifications of the commonly used ChIP-seq protocol for high resolution mapping of transcription factor binding sites.…
Sep 6, 2017
Rene Welch
Segvis
R
genomics
visualization
An R package to visualize ChIP-seq experiments across a set of pre-defined peaks. The package requires a set of pre-defined genomic regions, and aligned reads in bam format.…
Jul 3, 2015
Rene Welch
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